Migrate to org.opendc namespace

This change moves the OpenDC simulator codebase to the org.opendc
namespace of which we control the domain. Previously, we used the
com.atlarge package of which we did not control the domain, which might
lead to difficulties in the future.

6 files changed, 120 insertions, 35 deletions

diff --git a/simulator/opendc-runner-web/build.gradle.kts b/simulator/opendc-runner-web/build.gradle.kts
index 8c83db87..7e81347c 100644
--- a/simulator/opendc-runner-web/build.gradle.kts
+++ b/simulator/opendc-runner-web/build.gradle.kts
@@ -29,7 +29,7 @@ plugins {
 }
 
 application {
-    mainClassName = "com.atlarge.opendc.runner.web.MainKt"
+    mainClassName = "org.opendc.runner.web.MainKt"
 }
 
 dependencies {
diff --git a/simulator/opendc-runner-web/src/main/kotlin/com/atlarge/opendc/runner/web/Main.kt b/simulator/opendc-runner-web/src/main/kotlin/org/opendc/runner/web/Main.kt
index ac4d9087..69b2e69d 100644
--- a/simulator/opendc-runner-web/src/main/kotlin/com/atlarge/opendc/runner/web/Main.kt
+++ b/simulator/opendc-runner-web/src/main/kotlin/org/opendc/runner/web/Main.kt
@@ -1,15 +1,27 @@
-package com.atlarge.opendc.runner.web
-
-import com.atlarge.opendc.compute.virt.service.allocation.*
-import com.atlarge.opendc.experiments.sc20.experiment.attachMonitor
-import com.atlarge.opendc.experiments.sc20.experiment.createFailureDomain
-import com.atlarge.opendc.experiments.sc20.experiment.createProvisioner
-import com.atlarge.opendc.experiments.sc20.experiment.model.Workload
-import com.atlarge.opendc.experiments.sc20.experiment.monitor.ParquetExperimentMonitor
-import com.atlarge.opendc.experiments.sc20.experiment.processTrace
-import com.atlarge.opendc.experiments.sc20.trace.Sc20ParquetTraceReader
-import com.atlarge.opendc.experiments.sc20.trace.Sc20RawParquetTraceReader
-import com.atlarge.opendc.format.trace.sc20.Sc20PerformanceInterferenceReader
+/*
+ * Copyright (c) 2020 AtLarge Research
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in all
+ * copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ * SOFTWARE.
+ */
+
+package org.opendc.runner.web
+
 import com.github.ajalt.clikt.core.CliktCommand
 import com.github.ajalt.clikt.parameters.options.*
 import com.github.ajalt.clikt.parameters.types.file
@@ -26,6 +38,16 @@ import kotlinx.coroutines.channels.Channel
 import kotlinx.coroutines.test.TestCoroutineScope
 import mu.KotlinLogging
 import org.bson.Document
+import org.opendc.compute.virt.service.allocation.*
+import org.opendc.experiments.sc20.experiment.attachMonitor
+import org.opendc.experiments.sc20.experiment.createFailureDomain
+import org.opendc.experiments.sc20.experiment.createProvisioner
+import org.opendc.experiments.sc20.experiment.model.Workload
+import org.opendc.experiments.sc20.experiment.monitor.ParquetExperimentMonitor
+import org.opendc.experiments.sc20.experiment.processTrace
+import org.opendc.experiments.sc20.trace.Sc20ParquetTraceReader
+import org.opendc.experiments.sc20.trace.Sc20RawParquetTraceReader
+import org.opendc.format.trace.sc20.Sc20PerformanceInterferenceReader
 import org.opendc.simulator.utils.DelayControllerClockAdapter
 import java.io.File
 import java.util.*
diff --git a/simulator/opendc-runner-web/src/main/kotlin/com/atlarge/opendc/runner/web/ResultProcessor.kt b/simulator/opendc-runner-web/src/main/kotlin/org/opendc/runner/web/ResultProcessor.kt
index c0b0ac31..5cae6aa8 100644
--- a/simulator/opendc-runner-web/src/main/kotlin/com/atlarge/opendc/runner/web/ResultProcessor.kt
+++ b/simulator/opendc-runner-web/src/main/kotlin/org/opendc/runner/web/ResultProcessor.kt
@@ -1,4 +1,26 @@
-package com.atlarge.opendc.runner.web
+/*
+ * Copyright (c) 2020 AtLarge Research
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in all
+ * copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ * SOFTWARE.
+ */
+
+package org.opendc.runner.web
 
 import org.apache.spark.sql.Column
 import org.apache.spark.sql.Dataset
diff --git a/simulator/opendc-runner-web/src/main/kotlin/com/atlarge/opendc/runner/web/ScenarioManager.kt b/simulator/opendc-runner-web/src/main/kotlin/org/opendc/runner/web/ScenarioManager.kt
index 6ec4995d..0c6c8fee 100644
--- a/simulator/opendc-runner-web/src/main/kotlin/com/atlarge/opendc/runner/web/ScenarioManager.kt
+++ b/simulator/opendc-runner-web/src/main/kotlin/org/opendc/runner/web/ScenarioManager.kt
@@ -1,4 +1,26 @@
-package com.atlarge.opendc.runner.web
+/*
+ * Copyright (c) 2020 AtLarge Research
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in all
+ * copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ * SOFTWARE.
+ */
+
+package org.opendc.runner.web
 
 import com.mongodb.client.MongoCollection
 import com.mongodb.client.model.Filters
diff --git a/simulator/opendc-runner-web/src/main/kotlin/com/atlarge/opendc/runner/web/TopologyParser.kt b/simulator/opendc-runner-web/src/main/kotlin/org/opendc/runner/web/TopologyParser.kt
index f9b1c6c4..884833cb 100644
--- a/simulator/opendc-runner-web/src/main/kotlin/com/atlarge/opendc/runner/web/TopologyParser.kt
+++ b/simulator/opendc-runner-web/src/main/kotlin/org/opendc/runner/web/TopologyParser.kt
@@ -1,18 +1,27 @@
-package com.atlarge.opendc.runner.web
+/*
+ * Copyright (c) 2020 AtLarge Research
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in all
+ * copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ * SOFTWARE.
+ */
+
+package org.opendc.runner.web
 
-import com.atlarge.opendc.compute.core.MemoryUnit
-import com.atlarge.opendc.compute.core.ProcessingNode
-import com.atlarge.opendc.compute.core.ProcessingUnit
-import com.atlarge.opendc.compute.metal.NODE_CLUSTER
-import com.atlarge.opendc.compute.metal.driver.SimpleBareMetalDriver
-import com.atlarge.opendc.compute.metal.power.LinearLoadPowerModel
-import com.atlarge.opendc.compute.metal.service.ProvisioningService
-import com.atlarge.opendc.compute.metal.service.SimpleProvisioningService
-import com.atlarge.opendc.core.Environment
-import com.atlarge.opendc.core.Platform
-import com.atlarge.opendc.core.Zone
-import com.atlarge.opendc.core.services.ServiceRegistry
-import com.atlarge.opendc.format.environment.EnvironmentReader
 import com.mongodb.client.AggregateIterable
 import com.mongodb.client.MongoCollection
 import com.mongodb.client.model.Aggregates
@@ -22,6 +31,19 @@ import com.mongodb.client.model.Projections
 import kotlinx.coroutines.CoroutineScope
 import kotlinx.coroutines.launch
 import org.bson.Document
+import org.opendc.compute.core.MemoryUnit
+import org.opendc.compute.core.ProcessingNode
+import org.opendc.compute.core.ProcessingUnit
+import org.opendc.compute.metal.NODE_CLUSTER
+import org.opendc.compute.metal.driver.SimpleBareMetalDriver
+import org.opendc.compute.metal.power.LinearLoadPowerModel
+import org.opendc.compute.metal.service.ProvisioningService
+import org.opendc.compute.metal.service.SimpleProvisioningService
+import org.opendc.core.Environment
+import org.opendc.core.Platform
+import org.opendc.core.Zone
+import org.opendc.core.services.ServiceRegistry
+import org.opendc.format.environment.EnvironmentReader
 import java.time.Clock
 import java.util.*
 
diff --git a/simulator/opendc-runner-web/src/main/resources/log4j2.xml b/simulator/opendc-runner-web/src/main/resources/log4j2.xml
index 1d873554..16cedf34 100644
--- a/simulator/opendc-runner-web/src/main/resources/log4j2.xml
+++ b/simulator/opendc-runner-web/src/main/resources/log4j2.xml
@@ -26,17 +26,14 @@
 <Configuration status="WARN">
     <Appenders>
         <Console name="Console" target="SYSTEM_OUT">
-            <PatternLayout pattern="%d{HH:mm:ss.SSS} [%highlight{%-5level}] %logger{36} - %msg%n" disableAnsi="false" />
+            <PatternLayout pattern="%d{HH:mm:ss.SSS} [%highlight{%-5level}] %logger{36} - %msg%n" disableAnsi="false"/>
         </Console>
     </Appenders>
     <Loggers>
-        <Logger name="com.atlarge.odcsim" level="info" additivity="false">
+        <Logger name="org.opendc" level="warn" additivity="false">
             <AppenderRef ref="Console"/>
         </Logger>
-        <Logger name="com.atlarge.opendc" level="warn" additivity="false">
-            <AppenderRef ref="Console"/>
-        </Logger>
-        <Logger name="com.atlarge.opendc.runner" level="info" additivity="false">
+        <Logger name="org.opendc.runner" level="info" additivity="false">
             <AppenderRef ref="Console"/>
         </Logger>
         <Logger name="org.apache.hadoop" level="warn" additivity="false">