Prepare opendc repository for monorepo

This change prepares the opendc repository for a monorepo setup by
moving all files to the core/ directory. After all repositories have
been merged into this repository, we will move the correct files back.

5 files changed, 0 insertions, 393 deletions

diff --git a/mongodb/Dockerfile b/mongodb/Dockerfile
deleted file mode 100644
index b4eb9dd1..00000000
--- a/mongodb/Dockerfile
+++ /dev/null
@@ -1,5 +0,0 @@
-FROM mongo:4.2.5
-MAINTAINER Jacob Burley <j.burley@vu.nl>
-
-# Import init script
-ADD mongo-init-opendc-db.sh /docker-entrypoint-initdb.d
\ No newline at end of file
diff --git a/mongodb/docker-compose.yml b/mongodb/docker-compose.yml
deleted file mode 100644
index aa54a74c..00000000
--- a/mongodb/docker-compose.yml
+++ /dev/null
@@ -1,30 +0,0 @@
-version: "3"
-services:
-  mongo:
-    build:
-        context: ./
-    restart: on-failure
-    environment:
-      MONGO_INITDB_ROOT_USERNAME: root
-      MONGO_INITDB_ROOT_PASSWORD: rootpassword
-      MONGO_INITDB_DATABASE: admin
-      OPENDC_DB: opendc
-      OPENDC_DB_USERNAME: opendc
-      OPENDC_DB_PASSWORD: opendcpassword
-    ports:
-      - 27017:27017
-    #volumes:
-    #  - mongo-volume:/data/db
-
-  mongo-express:
-    image: mongo-express
-    restart: on-failure
-    ports:
-      - 8082:8081
-    environment:
-      ME_CONFIG_MONGODB_ADMINUSERNAME: root
-      ME_CONFIG_MONGODB_ADMINPASSWORD: rootpassword
-
-volumes:
-    mongo-volume:
-        external: false
diff --git a/mongodb/mongo-init-opendc-db.sh b/mongodb/mongo-init-opendc-db.sh
deleted file mode 100644
index e7a787fe..00000000
--- a/mongodb/mongo-init-opendc-db.sh
+++ /dev/null
@@ -1,122 +0,0 @@
-#!/bin/bash
-
-echo 'Creating opendc user and db'
-
-mongo opendc --host localhost \
-        --port 27017 \
-        -u "$MONGO_INITDB_ROOT_USERNAME" \
-        -p "$MONGO_INITDB_ROOT_PASSWORD" \
-        --authenticationDatabase admin \
-        --eval "db.createUser({user: '$OPENDC_DB_USERNAME', pwd: '$OPENDC_DB_PASSWORD', roles:[{role:'dbOwner', db: '$OPENDC_DB'}]});"
-
-MONGO_CMD="mongo $OPENDC_DB -u $OPENDC_DB_USERNAME -p $OPENDC_DB_PASSWORD --authenticationDatabase $OPENDC_DB"
-
-echo 'Creating collections'
-
-$MONGO_CMD --eval 'db.createCollection("users");'
-$MONGO_CMD --eval 'db.createCollection("simulations");'
-$MONGO_CMD --eval 'db.createCollection("topologies");'
-$MONGO_CMD --eval 'db.createCollection("experiments");'
-$MONGO_CMD --eval 'db.createCollection("prefabs");'
-
-echo 'Loading test data'
-
-$MONGO_CMD --eval 'db.users.insertOne(
-    {
-        "googleId": "23483578932789231",
-        "email": "jorgos.andreadis@gmail.com",
-        "givenName": "Jorgos",
-        "familyName": "Andreadis",
-        "authorizations": []
-    });'
-
-$MONGO_CMD --eval 'db.prefabs.insertOne(
-    {
-        "type": "rack",
-        "name": "testRack3",
-        "size": 42,
-        "depth": 42,
-        "author": "Jacob Burley",
-        "visibility": "public",
-        "children": [
-            {
-                "type": "switch",
-                "ports": 48,
-                "powerDraw": 150,
-                "psus": 1,
-                "size": 1
-            },
-            {
-                "type": "chassis",
-                "size": 4,
-                "children": [
-                    {
-                        "type": "mainboard",
-                        "sockets": 1,
-                        "dimmSlots": 4,
-                        "nics": 1,
-                        "pcieSlots": 2,
-                        "children": [
-                            {
-                                "type": "CPU",
-                                "coreCount": 4,
-                                "SMT": true,
-                                "baseClk": 3.5,
-                                "boostClk": 3.9,
-                                "brand": "Intel",
-                                "SKU": "i7-3770K",
-                                "socket": "LGA1155",
-                                "TDP": 77
-                            },
-                            {
-                                "type": "DDR3",
-                                "capacity": 4096,
-                                "memfreq": 1333,
-                                "ecc": false
-                            },
-                            {
-                                "type": "DDR3",
-                                "capacity": 4096,
-                                "memfreq": 1333,
-                                "ecc": false
-                            },
-                            {
-                                "type": "DDR3",
-                                "capacity": 4096,
-                                "memfreq": 1333,
-                                "ecc": false
-                            },
-                            {
-                                "type": "DDR3",
-                                "capacity": 4096,
-                                "memfreq": 1333,
-                                "ecc": false
-                            },
-                            {
-                                "type": "GPU",
-                                "VRAM": 8192,
-                                "coreCount": 2304,
-                                "brand": "AMD",
-                                "technologies": "OpenCL",
-                                "pcieGen": "3x16",
-                                "tdp": 169,
-                                "slots": 2
-                            }
-                        ]
-                    },
-                    {
-                        "type": "PSU",
-                        "wattage": 550,
-                        "ac": true
-                    },
-                    {
-                        "type": "disk",
-                        "size": 2000,
-                        "interface": "SATA",
-                        "media": "flash",
-                        "formFactor": 2.5
-                    }
-                ]
-            }
-        ]
-    });'
diff --git a/mongodb/prefab.py b/mongodb/prefab.py
deleted file mode 100755
index 124f45e3..00000000
--- a/mongodb/prefab.py
+++ /dev/null
@@ -1,112 +0,0 @@
-#!/Users/jacobburley/thesis-src/opendc/mongodb/opendc_testing/bin/python3
-#Change shebang to /usr/bin/python3 before using with docker
-# encoding: utf-8
-"""
-prefab
-
-CLI frontend for viewing, modifying and creating prefabs in OpenDC.
-
-"""
-import sys
-import prefabs
-
-def usage():
-	print("Usage: prefab add <prefab>:      imports a prefab from JSON")
-	print("	      list:              lists all (public) prefabs")
-	print("	      export <prefab> [json|yaml]:   exports the specified prefab to the specified filetype (with JSON used by default)")
-	print("	      clone <prefab> [new prefab name]:   clones the specified prefab, giving the new prefab a name if specified")
-	print("	      remove <prefab>:   removes the specified prefab from the database")
-
-def interactive(): #interactive CLI mode: recommended 
-	print("OpenDC Prefab CLI")
-	running = True
-	while(exit):
-		print(">", end=" ")
-		try:
-			command = input()
-			command = command.split()
-		except EOFError as e:
-			print("exit")
-			print("bye!")
-			exit()
-		except KeyboardInterrupt as KI:
-			print("\nbye!")
-			exit()
-		if(len(command) >= 1):
-			if(command[0] == "exit"):
-				print("bye!")
-				exit()
-			elif(command[0] == "list"): # decrypt
-				prefabs.list()
-			elif(command[0] == "help"): # decrypt
-				usage()
-			elif(command[0] == "add"):
-				if(len(command) == 3):
-					prefabs.add(command[1], command[2])
-				else:
-					prefabs.add(command[1], None)
-			elif(command[0] == "clone"):
-				if(len(command) == 3):
-					prefabs.clone(command[1], command[2])
-				else:
-					prefabs.clone(command[1], None)
-			elif(command[0] == "export"):
-				#print(sys.argv[2])
-				prefabs.export(command[1], "json")
-			elif(command[0] == "remove"):
-				print("WARNING: Doing so will permanently remove the specified prefab. \nThis action CANNOT be undone. Please type the name of the prefab to confirm deletion.")
-				confirm = input()
-				if confirm == command[1]:
-					prefabs.remove(command[1])
-					print(f'Prefab {command[1]} has been removed.')
-				else:
-					print("Confirmation failed. The prefab has not been removed.")
-			else:
-				print("prefabs: try 'help' for more information\n")
-		else:
-			print("prefabs: try 'help' for more information\n")
-
-
-def main():
-	if(len(sys.argv) >= 2):
-		if(sys.argv[1] == "list"): # decrypt
-			prefabs.list()
-			exit()
-		#elif(sys.argv[1] == "-e"): # encrypt
-		#	encrypt(sys.argv[2], sys.argv[3], sys.argv[4])
-		#elif(sys.argv[1] == "-v"): # verify
-		#	verify(sys.argv[2], sys.argv[3], sys.argv[4])
-		elif(sys.argv[1] == "help"): # decrypt
-			usage()
-			exit()
-		elif(sys.argv[1] == "add"):
-			if(sys.argv[3]):
-				prefabs.add(sys.argv[2], sys.argv[3])
-			else:
-				prefabs.add(sys.argv[2])
-			exit()
-		elif(sys.argv[1] == "export"):
-			#print(sys.argv[2])
-			prefabs.export(sys.argv[2], "json")
-			exit()
-		elif(sys.argv[1] == "remove"):
-			print("WARNING: Doing so will permanently remove the specified prefab. \nThis action CANNOT be undone. Please type the name of the prefab to confirm deletion.")
-			confirm = input()
-			if confirm == sys.argv[2]:
-				prefabs.remove(sys.argv[2])
-				print(f'Prefab {sys.argv[2]} has been removed.')
-			else:
-				print("Confirmation failed. The prefab has not been removed.")
-			exit()
-		else:
-			print("prefabs: try 'prefabs help' for more information\n")
-	elif(len(sys.argv) == 1):
-		interactive()
-
-	else:
-	#	print "Incorrect number of arguments!\n"
-		print("prefabs: try 'prefabs help' for more information\n")	
-
-
-if __name__ == "__main__":
-	main()
\ No newline at end of file
diff --git a/mongodb/prefabs.py b/mongodb/prefabs.py
deleted file mode 100755
index f6f46cbc..00000000
--- a/mongodb/prefabs.py
+++ /dev/null
@@ -1,124 +0,0 @@
-#!/Users/jacobburley/thesis-src/opendc/mongodb/opendc_testing/bin/python3
-#Change shebang to /usr/bin/python3 before using with docker
-# encoding: utf-8
-"""
-prefabs
-
-Python Library for interacting with mongoDB prefabs collection.
-
-"""
-import urllib.parse
-import pprint
-import sys
-import os
-import json
-import re
-import ujson
-#import pyyaml
-
-from pymongo import MongoClient
-from bson.json_util import loads, dumps, RELAXED_JSON_OPTIONS, CANONICAL_JSON_OPTIONS
-
-#mongodb_opendc_db = os.environ['OPENDC_DB']
-#mongodb_opendc_user = os.environ['OPENDC_DB_USERNAME']
-#mongodb_opendc_password = os.environ['OPENDC_DB_PASSWORD']
-
-#if mongodb_opendc_db == None or mongodb_opendc_user == None or mongodb_opendc_password == None:
-#	print("One or more environment variables are not set correctly. \nYou may experience issues connecting to the mongodb database.")
-
-user = urllib.parse.quote_plus('opendc') #TODO: replace this with environment variable
-password = urllib.parse.quote_plus('opendcpassword') #TODO: same as above
-database = urllib.parse.quote_plus('opendc')
-
-client = MongoClient('mongodb://%s:%s@localhost/default_db?authSource=%s' % (user, password, database))
-opendcdb = client.opendc
-prefabs_collection = opendcdb.prefabs
-
-
-def add(prefab_file, name):
-	if(re.match(r"\w+(\\\ \w*)*\.json", prefab_file)):
-		try:
-			with open(prefab_file, "r") as json_file:
-				json_prefab = json.load(json_file)
-				#print(json_prefab)
-				if name != None:
-					json_prefab["name"] = name
-				try:
-					prefab_id = prefabs_collection.insert(json_prefab)
-				except ConnectionFailure:
-					print("ERROR: Could not connect to the mongoDB database.")
-				except DuplicateKeyError:
-					print("ERROR: A prefab with the same unique ID already exists in the database. \nPlease remove the '_id' before trying again.\nYour prefab has not been imported.")
-				except:
-					print("ERROR: A general error has occurred. Your prefab has not been imported.")
-				if prefab_id != None:
-					if name != None:
-						print(f'Prefab "{name}" has been imported successfully.')
-					else:
-						print(f'Prefab "{prefab_file}" has been imported successfully.')
-		except FileNotFoundError:
-			print(f"ERROR: {prefab_file} could not be found in the specified path. No prefabs have been imported.")
-	elif(re.match(r"\w+(\\\ \w*)*\.yml", prefab_file)):
-		print("expecting a yaml file here")
-		#yaml
-	else:
-		print("The filetype provided is an unsupported filetype.")
-		#unsupported filetype
-
-def clone(prefab_name, new_name):
-	bson = prefabs_collection.find_one({'name': prefab_name})
-	json_string = dumps(bson) #convert BSON representation to JSON
-	chosen_prefab = json.loads(json_string) #load as a JSON object
-	
-	chosen_prefab.pop("_id") # clean out our _id field from the export: mongo will generate a new one if this is imported back in
-
-	if new_name != None:
-			chosen_prefab["name"] = new_name
-	try:
-		prefab_id = prefabs_collection.insert_one(chosen_prefab)
-	except ConnectionFailure:
-		print("ERROR: Could not connect to the mongoDB database.")
-	except:
-		print("ERROR: A general error has occurred. Your selected prefab has not been cloned.")
-	if prefab_id != None:
-		if new_name != None:
-			print(f'Prefab "{prefab_name}" has been cloned successfully as {new_name}.')
-		else:
-			print(f'Prefab "{prefab_name}" has been cloned successfully.')
-
-def export(prefab_name, type):
-	bson = prefabs_collection.find_one({'name': prefab_name})
-	json_string = dumps(bson) #convert BSON representation to JSON
-	chosen_prefab = json.loads(json_string) #load as a JSON object
-	
-	chosen_prefab.pop("_id") # clean out our _id field from the export: mongo will generate a new one if this is imported back in
-
-	with open(f'{prefab_name}.json', 'w', encoding='utf8') as f:
-		json.dump(chosen_prefab, f, ensure_ascii=False, indent=4)
-	print(f'Prefab {prefab_name} written to {os.getcwd()}/{prefab_name}.json.')
-	#pprint.pprint(json_string)
-	#pprint.pprint(json.loads(str(json_string)))
-
-def list():
-	#TODO: why does it output in single quotations?
-	cursor = prefabs_collection.find()
-	prefabs = []
-	for record in cursor:
-		#pprint.pprint(record)
-		#print(record)
-		json_string = dumps(record, json_options=RELAXED_JSON_OPTIONS) ##pymongo retrieves BSON objects, which need to be converted to json for pythons json module
-		prefabs.append(json.loads(json_string))
-	
-	#print(f'There are {str(len(prefabs))} prefabs in the database. They are:')
-	print("Name 			Author")
-	for prefab in prefabs:
-		if(prefab['visibility'] == "private"):
-			continue
-		print(f"{prefab['name']} 		{prefab['author']}")
-		#pprint.pprint(prefab)
-
-
-def remove(prefab_name):
-	prefabs_collection.delete_one({'name': prefab_name})
-
-