merge: Update build and runtime dependencies (#90)

This pull request updates the build and runtime dependencies used by OpenDC to 
their latest version compatible with the project.

## Implementation Notes :hammer_and_pick:

* Update simulator dependency versions
* Fix conversion from UUID to Binary 

10 files changed, 21 insertions, 20 deletions

diff --git a/buildSrc/src/main/kotlin/benchmark-conventions.gradle.kts b/buildSrc/src/main/kotlin/benchmark-conventions.gradle.kts
index 7d8775c6..554d2279 100644
--- a/buildSrc/src/main/kotlin/benchmark-conventions.gradle.kts
+++ b/buildSrc/src/main/kotlin/benchmark-conventions.gradle.kts
@@ -34,7 +34,7 @@ configure<AllOpenExtension> {
 }
 
 jmh {
-    jmhVersion.set("1.33")
+    jmhVersion.set("1.35")
 
     profilers.add("stack")
     profilers.add("gc")
diff --git a/buildSrc/src/main/kotlin/quarkus-conventions.gradle.kts b/buildSrc/src/main/kotlin/quarkus-conventions.gradle.kts
index a0447362..75c4a454 100644
--- a/buildSrc/src/main/kotlin/quarkus-conventions.gradle.kts
+++ b/buildSrc/src/main/kotlin/quarkus-conventions.gradle.kts
@@ -51,7 +51,7 @@ tasks.withType<org.jetbrains.kotlin.gradle.tasks.KotlinCompile> {
 
 /* Launch Quarkus dev mode from project root directory */
 tasks.quarkusDev {
-    workingDir = rootProject.projectDir.toString()
+    workingDirectory.set(rootProject.projectDir)
 }
 
 /* Make sure the jacoco-report-aggregation plugin picks up the Quarkus coverage data */
diff --git a/gradle/libs.versions.toml b/gradle/libs.versions.toml
index d4b1b300..899d3cfc 100644
--- a/gradle/libs.versions.toml
+++ b/gradle/libs.versions.toml
@@ -1,10 +1,10 @@
 [versions]
 calcite = "1.30.0"
-clikt = "3.4.2"
+clikt = "3.5.0"
 commons-math3 = "3.6.1"
 dokka = "1.6.21"
 gradle-node = "3.3.0"
-hadoop = "3.3.2"
+hadoop = "3.3.3"
 jackson = "2.13.3"
 jandex-gradle = "0.12.0"
 jline = "3.21.0"
@@ -12,17 +12,17 @@ jmh-gradle = "0.6.6"
 jakarta-validation = "2.0.2"
 junit-jupiter = "5.8.2"
 kotlin = "1.6.21"
-kotlin-logging = "2.1.21"
-kotlinx-coroutines = "1.6.1"
+kotlin-logging = "2.1.23"
+kotlinx-coroutines = "1.6.3"
 ktlint-gradle = "10.3.0"
 log4j = "2.17.2"
 microprofile-openapi = "3.0"
 mockk = "1.12.4"
-parquet = "1.12.2"
+parquet = "1.12.3"
 progressbar = "0.9.3"
-quarkus = "2.9.0.Final"
+quarkus = "2.10.0.Final"
 quarkus-junit5-mockk = "1.1.1"
-sentry = "5.7.2"
+sentry = "6.1.2"
 slf4j = "1.7.36"
 
 [libraries]
diff --git a/opendc-compute/opendc-compute-workload/src/main/kotlin/org/opendc/compute/workload/export/parquet/Utils.kt b/opendc-compute/opendc-compute-workload/src/main/kotlin/org/opendc/compute/workload/export/parquet/Utils.kt
index 9921f5b8..050e0f0a 100644
--- a/opendc-compute/opendc-compute-workload/src/main/kotlin/org/opendc/compute/workload/export/parquet/Utils.kt
+++ b/opendc-compute/opendc-compute-workload/src/main/kotlin/org/opendc/compute/workload/export/parquet/Utils.kt
@@ -27,12 +27,12 @@ import java.nio.ByteBuffer
 import java.util.UUID
 
 /**
- *
- * @author Fabian Mastenbroek (f.s.mastenbroek@student.tudelft.nl)
+ * Helper method to convert a [UUID] into a [Binary] object consumed by Parquet.
  */
 internal fun UUID.toBinary(): Binary {
-    val bb = ByteBuffer.wrap(ByteArray(16))
+    val bb = ByteBuffer.allocate(16)
     bb.putLong(mostSignificantBits)
     bb.putLong(leastSignificantBits)
+    bb.rewind()
     return Binary.fromConstantByteBuffer(bb)
 }
diff --git a/opendc-trace/opendc-trace-opendc/build.gradle.kts b/opendc-trace/opendc-trace-opendc/build.gradle.kts
index 236bdedc..18967136 100644
--- a/opendc-trace/opendc-trace-opendc/build.gradle.kts
+++ b/opendc-trace/opendc-trace-opendc/build.gradle.kts
@@ -32,6 +32,7 @@ dependencies {
     api(projects.opendcTrace.opendcTraceApi)
 
     implementation(projects.opendcTrace.opendcTraceParquet)
+    implementation(libs.jackson.core)
 
     testImplementation(projects.opendcTrace.opendcTraceTestkit)
     testRuntimeOnly(libs.slf4j.simple)
diff --git a/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmInterferenceJsonTableReader.kt b/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmInterferenceJsonTableReader.kt
index 1841c486..d4858f23 100644
--- a/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmInterferenceJsonTableReader.kt
+++ b/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmInterferenceJsonTableReader.kt
@@ -22,14 +22,14 @@
 
 package org.opendc.trace.opendc
 
+import com.fasterxml.jackson.core.JsonParseException
+import com.fasterxml.jackson.core.JsonParser
+import com.fasterxml.jackson.core.JsonToken
 import org.opendc.trace.*
 import org.opendc.trace.conv.INTERFERENCE_GROUP_MEMBERS
 import org.opendc.trace.conv.INTERFERENCE_GROUP_SCORE
 import org.opendc.trace.conv.INTERFERENCE_GROUP_TARGET
 import org.opendc.trace.util.convertTo
-import shaded.parquet.com.fasterxml.jackson.core.JsonParseException
-import shaded.parquet.com.fasterxml.jackson.core.JsonParser
-import shaded.parquet.com.fasterxml.jackson.core.JsonToken
 import java.time.Duration
 import java.time.Instant
 import java.util.*
diff --git a/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmInterferenceJsonTableWriter.kt b/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmInterferenceJsonTableWriter.kt
index d726e890..d5e8a0b6 100644
--- a/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmInterferenceJsonTableWriter.kt
+++ b/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmInterferenceJsonTableWriter.kt
@@ -22,11 +22,11 @@
 
 package org.opendc.trace.opendc
 
+import com.fasterxml.jackson.core.JsonGenerator
 import org.opendc.trace.*
 import org.opendc.trace.conv.INTERFERENCE_GROUP_MEMBERS
 import org.opendc.trace.conv.INTERFERENCE_GROUP_SCORE
 import org.opendc.trace.conv.INTERFERENCE_GROUP_TARGET
-import shaded.parquet.com.fasterxml.jackson.core.JsonGenerator
 import java.time.Duration
 import java.time.Instant
 import java.util.*
diff --git a/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmTraceFormat.kt b/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmTraceFormat.kt
index a9c5b934..2c5f892b 100644
--- a/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmTraceFormat.kt
+++ b/opendc-trace/opendc-trace-opendc/src/main/kotlin/org/opendc/trace/opendc/OdcVmTraceFormat.kt
@@ -22,6 +22,8 @@
 
 package org.opendc.trace.opendc
 
+import com.fasterxml.jackson.core.JsonEncoding
+import com.fasterxml.jackson.core.JsonFactory
 import org.apache.parquet.column.ParquetProperties
 import org.apache.parquet.hadoop.ParquetFileWriter
 import org.apache.parquet.hadoop.metadata.CompressionCodecName
@@ -35,8 +37,6 @@ import org.opendc.trace.spi.TableDetails
 import org.opendc.trace.spi.TraceFormat
 import org.opendc.trace.util.parquet.LocalParquetReader
 import org.opendc.trace.util.parquet.LocalParquetWriter
-import shaded.parquet.com.fasterxml.jackson.core.JsonEncoding
-import shaded.parquet.com.fasterxml.jackson.core.JsonFactory
 import java.nio.file.Files
 import java.nio.file.Path
 import kotlin.io.path.exists
diff --git a/opendc-web/opendc-web-runner-quarkus/build.gradle.kts b/opendc-web/opendc-web-runner-quarkus/build.gradle.kts
index a92e03f2..8e4e08d5 100644
--- a/opendc-web/opendc-web-runner-quarkus/build.gradle.kts
+++ b/opendc-web/opendc-web-runner-quarkus/build.gradle.kts
@@ -28,7 +28,7 @@ plugins {
 }
 
 quarkusExtension {
-    deploymentModule = "opendc-web-runner-quarkus-deployment"
+    deploymentModule.set("opendc-web-runner-quarkus-deployment")
 }
 
 dependencies {
diff --git a/opendc-web/opendc-web-ui-quarkus/build.gradle.kts b/opendc-web/opendc-web-ui-quarkus/build.gradle.kts
index 7f2fad20..3f8887f6 100644
--- a/opendc-web/opendc-web-ui-quarkus/build.gradle.kts
+++ b/opendc-web/opendc-web-ui-quarkus/build.gradle.kts
@@ -28,7 +28,7 @@ plugins {
 }
 
 quarkusExtension {
-    deploymentModule = "opendc-web-ui-quarkus-deployment"
+    deploymentModule.set("opendc-web-ui-quarkus-deployment")
 }
 
 dependencies {