This change updates the project structure to become flattened.
Previously, the simulator, frontend and API each lived into their own
directory.

With this change, all modules of the project live in the top-level
directory of the repository. This should improve discoverability of
modules of the project.

This commit updates the Gradle wrapper to version 6.5.1 to address some
of the issues we were having when importing the project.

This change prepares the simulator Git repository for the monorepo residing at
https://github.com/atlarge-research.com/opendc. To accomodate for this, we
move all files into a simulator subdirectory.